docxology/codomyrmex
GitHub: docxology/codomyrmex
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# 🐜 Codomyrmex
Codomyrmex 是一个生产级库，包含 **127 个深度集成的模块**，涵盖 AI 智能体、云基础设施、安全、金融、多媒体等领域——所有模块均基于严格的 **Zero-Mock**（零模拟）测试策略，确保每个方法都是真实的、经过测试的、有文档记录的且功能正常的。该生态系统包括 **3,000+ 个 Python 文件**、**905+ 个测试文件**、**1,029+ 个文档页面** 和 **36 个 GitHub Actions 工作流**。
## 📚 文档中心
### 顶层文档
| 文档 | 描述 |
|:---|:---|
| [**docs/README.md**](docs/README.md) | 文档主页 — 完整目录指南 |
| [**docs/ARCHITECTURE.md**](docs/ARCHITECTURE.md) | 系统架构，依赖层，设计模式 |
| [**docs/AGENTS.md**](docs/AGENTS.md) | 智能体协调规则和自主工作流 |
| [**docs/SPEC.md**](docs/SPEC.md) | 技术规范，API 契约，Schemas |
| [**docs/PAI.md**](docs/PAI.md) | Personal AI Infrastructure 集成参考 |
| [**docs/PAI_DASHBOARD.md**](docs/PAI_DASHBOARD.md) | PAI 仪表板 GUI 参考和选项卡指南 |
| [**docs/index.md**](docs/index.md) | MkDocs 站点索引和导航入口点 |
### 文档目录
| 目录 | 文件 | 描述 |
|:---|:---:|:---|
| [**docs/getting-started/**](docs/getting-started/) | 9 | 快速入门、安装、设置、教程 |
| [**docs/development/**](docs/development/) | 10 | 开发环境、测试策略、贡献指南 |
| [**docs/reference/**](docs/reference/) | 16 | API 参考，CLI 参考，故障排除 |
| [**docs/modules/**](docs/modules/) | 126 个目录 | 每个模块的文档（每个模块的 README, SPEC, AGENTS, PAI） |
| [**docs/agents/**](docs/agents/) | 4 | 智能体规则、协调、自主操作 |
| [**docs/integration/**](docs/integration/) | 11 | 外部服务集成（Google, GitHub 等） |
| [**docs/deployment/**](docs/deployment/) | 5 | 生产部署指南和检查清单 |
| [**docs/security/**](docs/security/) | 11 | 安全理论、威胁模型、审计流程 |
| [**docs/pai/**](docs/pai/) | 10 | PAI 仪表板、邮件、日历、技能管理 |
| [**docs/bio/**](docs/bio/) | 15 | 生物学与蚁学视角 |
| [**docs/cognitive/**](docs/cognitive/) | 11 | 认知科学与工程视角 |
| [**docs/agi/**](docs/agi/) | 14 | AGI 理论、涌现、递归自我改进 |
| [**docs/compliance/**](docs/compliance/) | 5 | 审计报告、策略合规、SOC2 |
| [**docs/examples/**](docs/examples/) | 8 | 代码示例、集成演示、演练 |
| [**docs/project/**](docs/project/) | 9 | 架构、路线图、贡献、治理 |
| [**docs/project_orchestration/**](docs/project_orchestration/) | 11 | 多项目工作流指南和流水线 |
| [**docs/skills/**](docs/skills/) | 9 | 技能系统生命周期、治理、编写 |
| [**docs/plans/**](docs/plans/) | 1 | 实施计划和集成路线图 |
## 📐 系统架构
```
graph TB
subgraph Core["🧠 Core Intelligence"]
LLM["LLM Subsystem"]
Agents["Agent Framework"]
Cerebrum["Cerebrum Reasoning"]
Orchestrator["Orchestrator"]
MCP["Model Context Protocol"]
end
subgraph AI["🤖 AI & ML"]
EvolutionaryAI["Evolutionary AI"]
GraphRAG["Graph RAG"]
PromptEng["Prompt Engineering"]
VectorStore["Vector Store"]
Coding["Coding Agents"]
Skills["Skills Engine"]
end
subgraph Infra["☁️ Infrastructure"]
Cloud["Cloud (AWS/GCP/Azure)"]
Containerization["Containerization"]
CICD["CI/CD Automation"]
Deployment["Deployment"]
EdgeComputing["Edge Computing"]
Networking["Networking"]
end
subgraph Data["�� Data & Storage"]
DB["Database Management"]
Cache["Cache Layer"]
DataLineage["Data Lineage"]
Serialization["Serialization"]
Documents["Documents"]
FeatureStore["Feature Store"]
end
subgraph Security["🔒 Security"]
Auth["Authentication"]
Crypto["Cryptography"]
Encryption["Encryption"]
Privacy["Privacy"]
Defense["Defense"]
Identity["Identity"]
end
subgraph Media["🎨 Multimedia"]
Audio["Audio"]
Video["Video"]
Multimodal["Multimodal"]
DataViz["Data Visualization"]
Meme["Meme Generator"]
end
subgraph PAI["🏠 Personal AI"]
Email["Email"]
Calendar["Calendar"]
Finance["Finance"]
Wallet["Wallet"]
Website["Website"]
PAIDash["PAI Dashboard"]
end
subgraph DevTools["🛠️ Developer Tools"]
CLI["CLI"]
IDE["IDE Integration"]
GitOps["Git Operations"]
GitAnalysis["Git Analysis"]
TreeSitter["Tree-sitter"]
StaticAnalysis["Static Analysis"]
Terminal["Terminal Interface"]
end
Core --> AI
Core --> Infra
Core --> Data
Core --> Security
Core --> Media
Core --> PAI
Core --> DevTools
LLM --> Agents
Agents --> Orchestrator
Orchestrator --> MCP
MCP --> Skills
```
## 🗂️ 完整模块清单
### 🧠 核心智能模块
| 模块 | Py | 测试 | 文档 | 配置 | 脚本 | 描述 |
|:---|:---:|:---:|:---:|:---:|:---:|:---|
| [`agents`](src/codomyrmex/agents/) | 168 | 83 | [📖](docs/modules/agents/) | [⚙️](config/agents/config.yaml) | [📜](scripts/agents/) | 多提供商智能体框架 (Gemini, Claude, OpenAI, Jules) |
| [`cerebrum`](src/codomyrmex/cerebrum/) | 32 | 13 | [📖](docs/modules/cerebrum/) | [⚙️](config/cerebrum/config.yaml) | [📜](scripts/cerebrum/) | 认知推理引擎，具有思维链和决策树功能 |
| [`llm`](src/codomyrmex/llm/) | 41 | 20 | [📖](docs/modules/llm/) | [⚙️](config/llm/config.yaml) | [📜](scripts/llm/) | LLM 子系统，支持 OpenRouter, Gemini 2.5 Pro, 流式传输 |
| [`orchestrator`](src/codomyrmex/orchestrator/) | 46 | 20 | [📖](docs/modules/orchestrator/) | [⚙️](config/orchestrator/config.yaml) | [📜](scripts/orchestrator/) | 工作流引擎，流水线执行，并行编排 |
| [`model_context_protocol`](src/codomyrmex/model_context_protocol/) | 27 | 9 | [📖](docs/modules/model_context_protocol/) | [⚙️](config/model_context_protocol/config.yaml) | [📜](scripts/model_context_protocol/) | MCP 工具服务器，Bridge 和协议实现 |
| [`prompt_engineering`](src/codomyrmex/prompt_engineering/) | 10 | 7 | [📖](docs/modules/prompt_engineering/) | [⚙️](config/prompt_engineering/config.yaml) | [📜](scripts/prompt_engineering/) | 模板管理，Prompt 优化，Few-shot 模式 |
| [`skills`](src/codomyrmex/skills/) | 22 | 11 | [📖](docs/modules/skills/) | [⚙️](config/skills/config.yaml) | [📜](scripts/skills/) | 可扩展技能注册表和执行引擎 |
### 🤖 AI 与机器学习模块
| 模块 | Py | 测试 | 文档 | 配置 | 脚本 | 描述 |
|:---|:---:|:---:|:---:|:---:|:---:|:---|
| [`coding`](src/codomyrmex/coding/) | 71 | 18 | [📖](docs/modules/coding/) | [⚙️](config/coding/config.yaml) | [📜](scripts/coding/) | 代码生成、重构、分析和审查智能体 |
| [`evolutionary_ai`](src/codomyrmex/evolutionary_ai/) | 11 | 6 | [📖](docs/modules/evolutionary_ai/) | [⚙️](config/evolutionary_ai/config.yaml) | [📜](scripts/evolutionary_ai/) | 遗传算法，适应度，选择，基因组算子 |
| [`graph_rag`](src/codomyrmex/graph_rag/) | 5 | 3 | [📖](docs/modules/graph_rag/) | [⚙️](config/graph_rag/config.yaml) | [📜](scripts/graph_rag/) | 基于图的检索增强生成 (Graph RAG) |
| [`vector_store`](src/codomyrmex/vector_store/) | 5 | 4 | [📖](docs/modules/vector_store/) | [⚙️](config/vector_store/config.yaml) | [📜](scripts/vector_store/) | Embedding 存储，相似性搜索，FAISS/ChromaDB |
| [`bio_simulation`](src/codomyrmex/bio_simulation/) | 9 | 3 | [📖](docs/modules/bio_simulation/) | [⚙️](config/bio_simulation/config.yaml) | [📜](scripts/bio_simulation/) | 生物群落模拟和基因组种群模型 |
| [`simulation`](src/codomyrmex/simulation/) | 3 | 3 | [📖](docs/modules/simulation/) | [⚙️](config/simulation/config.yaml) | [📜](scripts/simulation/) | 通用仿真框架 |
| [`quantum`](src/codomyrmex/quantum/) | 6 | 1 | [📖](docs/modules/quantum/) | [⚙️](config/quantum/config.yaml) | [📜](scripts/quantum/) | 量子计算抽象和电路模拟 |
| [`fpf`](src/codomyrmex/fpf/) | 26 | 11 | [📖](docs/modules/fpf/) | [⚙️](config/fpf/config.yaml) | [📜](scripts/fpf/) | 自由能原理框架（Active Inference） |
### ☁️ 基础设施与 DevOps 模块
| 模块 | Py | 测试 | 文档 | 配置 | 脚本 | 描述 |
|:---|:---:|:---:|:---:|:---:|:---:|:---|
| [`cloud`](src/codomyrmex/cloud/) | 52 | 22 | [📖](docs/modules/cloud/) | [⚙️](config/cloud/config.yaml) | [📜](scripts/cloud/) | 多云 SDK (AWS, GCP, Azure, Infomaniak, Coda.io) |
| [`containerization`](src/codomyrmex/containerization/) | 16 | 7 | [📖](docs/modules/containerization/) | [⚙️](config/containerization/config.yaml) | [📜](scripts/containerization/) | Docker/Podman 管理，镜像构建，Registry |
| [`container_optimization`](src/codomyrmex/container_optimization/) | 3 | 2 | [📖](docs/modules/container_optimization/) | [⚙️](config/container_optimization/config.yaml) | [📜](scripts/container_optimization/) | 资源调优和容器性能优化 |
| [`ci_cd_automation`](src/codomyrmex/ci_cd_automation/) | 22 | 12 | [📖](docs/modules/ci_cd_automation/) | [⚙️](config/ci_cd_automation/config.yaml) | [📜](scripts/ci_cd_automation/) | 流水线构建，Artifact 管理，部署编排 |
| [`deployment`](src/codomyrmex/deployment/) | 13 | 7 | [📖](docs/modules/deployment/) | [⚙️](config/deployment/config.yaml) | [📜](scripts/deployment/) | 部署策略（蓝绿部署，金丝雀发布，滚动更新） |
| [`edge_computing`](src/codomyrmex/edge_computing/) | 14 | 2 | [📖](docs/modules/edge_computing/) | [⚙️](config/edge_computing/config.yaml) | [📜](scripts/edge_computing/) | 边缘集群管理，调度，健康监控 |
| [`networking`](src/codomyrmex/networking/) | 9 | 6 | [📖](docs/modules/networking/) | [⚙️](config/networking/config.yaml) | [📜](scripts/networking/) | HTTP 客户端，WebSocket，gRPC，服务网格 |
| [`networks`](src/codomyrmex/networks/) | 3 | 3 | [📖](docs/modules/networks/) | [⚙️](config/networks/config.yaml) | [📜](scripts/networks/) | 网络拓扑和图分析 |
| [`cost_management`](src/codomyrmex/cost_management/) | 4 | 2 | [📖](docs/modules/cost_management/) | [⚙️](config/cost_management/config.yaml) | [📜](scripts/cost_management/) | 云成本跟踪，预算警报，优化 |
### 💾 数据与存储模块
| 模块 | Py | 测试 | 文档 | 配置 | 脚本 | 描述 |
|:---|:---:|:---:|:---:|:---:|:---:|:---|
| [`database_management`](src/codomyrmex/database_management/) | 17 | 12 | [📖](docs/modules/database_management/) | [⚙️](config/database_management/config.yaml) | [📜](scripts/database_management/) | 多数据库引擎 (SQLite, PostgreSQL)，迁移，ORM |
| [`cache`](src/codomyrmex/cache/) | 19 | 11 | [📖](docs/modules/cache/) | [⚙️](config/cache/config.yaml) | [📜](scripts/cache/) | 多后端缓存 (Redis, memory, disk)，TTL, LRU |
| [`data_lineage`](src/codomyrmex/data_lineage/) | 5 | 2 | [📖](docs/modules/data_lineage/) | [⚙️](config/data_lineage/config.yaml) | [📜](scripts/data_lineage/) | 数据流跟踪，血缘图，来源 |
| [`serialization`](src/codomyrmex/serialization/) | 7 | 6 | [📖](docs/modules/serialization/) | [⚙️](config/serialization/config.yaml) | [📜](scripts/serialization/) | JSON, YAML, MessagePack, Protobuf 序列化 |
| [`documents`](src/codomyrmex/documents/) | 38 | 16 | [📖](docs/modules/documents/) | [⚙️](config/documents/config.yaml) | [📜](scripts/documents/) | 文处理 (PDF, HTML, CSV, XML, Markdown) |
| [`feature_store`](src/codomyrmex/feature_store/) | 5 | 2 | [📖](docs/modules/feature_store/) | [⚙️](config/feature_store/config.yaml) | [📜](scripts/feature_store/) | ML 特征注册表，版本控制和服务 |
| [`agentic_memory`](src/codomyrmex/agentic_memory/) | 35 | 30 | [📖](docs/modules/agentic_memory/) | [⚙️](config/agentic_memory/config.yaml) | [📜](scripts/agentic_memory/) | 长期智能体记忆，检索和知识图谱 |
| [`model_ops`](src/codomyrmex/model_ops/) | 22 | 10 | [📖](docs/modules/model_ops/) | [⚙️](config/model_ops/config.yaml) | [📜](scripts/model_ops/) | ML 模型生命周期，注册表，版本控制 |
### 🔒 安全与身份模块
| 模块 | Py | 测试 | 文档 | 配置 | 脚本 | 描述 |
|:---|:---:|:---:|:---:|:---:|:---:|:---|
| [`security`](src/codomyrmex/security/) | 47 | 16 | [📖](docs/modules/security/) | [⚙️](config/security/config.yaml) | [📜](scripts/security/) | 威胁检测，漏洞扫描，审计追踪 |
| [`auth`](src/codomyrmex/auth/) | 13 | 4 | [📖](docs/modules/auth/) | [⚙️](config/auth/config.yaml) | [📜](scripts/auth/) | OAuth, API Key, JWT, RBAC 认证 |
| [`crypto`](src/codomyrmex/crypto/) | 37 | 26 | [📖](docs/modules/crypto/) | [⚙️](config/crypto/config.yaml) | [📜](scripts/crypto/) | 加密原语，哈希，密钥管理 |
| [`encryption`](src/codomyrmex/encryption/) | 12 | 3 | [📖](docs/modules/encryption/) | [⚙️](config/encryption/config.yaml) | [📜](scripts/encryption/) | AES-GCM，签名，KDF, HMAC，密钥轮换 |
| [`privacy`](src/codomyrmex/privacy/) | 4 | 2 | [📖](docs/modules/privacy/) | [⚙️](config/privacy/config.yaml) | [📜](scripts/privacy/) | PII 检测，数据匿名化，合规性 |
| [`defense`](src/codomyrmex/defense/) | 4 | 5 | [📖](docs/modules/defense/) | [⚙️](config/defense/config.yaml) | [📜](scripts/defense/) | 对抗性防御，输入清洗（已弃用） |
| [`identity`](src/codomyrmex/identity/) | 5 | 4 | [📖](docs/modules/identity/) | [⚙️](config/identity/config.yaml) | [📜](scripts/identity/) | 数字身份，角色管理，生物认知认证 |
| [`wallet`](src/codomyrmex/wallet/) | 16 | 3 | [📖](docs/modules/wallet/) | [⚙️](config/wallet/config.yaml) | [📜](scripts/wallet/) | 加密货币钱包，密钥存储，交易签名 |
### 🎨 多媒体与可视化模块
| 模块 | Py | 测试 | 文档 | 配置 | 脚本 | 描述 |
|:---|:---:|:---:|:---:|:---:|:---:|:---|
| [`audio`](src/codomyrmex/audio/) | 15 | 5 | [📖](docs/modules/audio/) | [⚙️](config/audio/config.yaml) | [📜](scripts/audio/) | TTS (edge-tts, pyttsx3)，音频处理，转录 |
| [`video`](src/codomyrmex/video/) | 12 | 4 | [📖](docs/modules/video/) | [⚙️](config/video/config.yaml) | [📜](scripts/video/) | 视频处理，帧提取，Veo 2.0 生成 |
| [`multimodal`](src/codomyrmex/multimodal/) | 2 | 3 | [📖](docs/modules/multimodal/) | [⚙️](config/multimodal/config.yaml) | [📜](scripts/multimodal/) | Imagen 3 图像生成，多模态 AI 管道 |
| [`data_visualization`](src/codomyrmex/data_visualization/) | 68 | 20 | [📖](docs/modules/data_visualization/) | [⚙️](config/data_visualization/config.yaml) | [📜](scripts/data_visualization/) | Matplotlib, Plotly，图表生成，仪表板 |
| [`meme`](src/codomyrmex/meme/) | 57 | 6 | [📖](docs/modules/meme/) | [⚙️](config/meme/config.yaml) | [📜](scripts/meme/) | Meme 生成，模板引擎，社交媒体格式化 |
| [`spatial`](src/codomyrmex/spatial/) | 12 | 3 | [📖](docs/modules/spatial/) | [⚙️](config/spatial/config.yaml) | [📜](scripts/spatial/) | 地理空间数据，坐标系，地图 |
### 🏠 个人 AI (PAI) 模块
| 模块 | Py | 测试 | 文档 | 配置 | 脚本 | 描述 |
|:---|:---:|:---:|:---:|:---:|:---:|:---|
| [`email`](src/codomyrmex/email/) | 14 | 4 | [📖](docs/modules/email/) | [⚙️](config/email/config.yaml) | [📜](scripts/email/) | Gmail, AgentMail 提供商，SMTP, IMAP |
| [`calendar_integration`](src/codomyrmex/calendar_integration/) | 6 | 2 | [📖](docs/modules/calendar_integration/) | [⚙️](config/calendar_integration/config.yaml) | [📜](scripts/calendar_integration/) | Google Calendar CRUD，事件管理，日程安排 |
| [`finance`](src/codomyrmex/finance/) | 10 | 2 | [📖](docs/modules/finance/) | [⚙️](config/finance/config.yaml) | [📜](scripts/finance/) | 账本，工资单，预测，税务计算 |
| [`website`](src/codomyrmex/website/) | 15 | 19 | [📖](docs/modules/website/) | [⚙️](config/website/config.yaml) | [📜](scripts/website/) | PAI 仪表板服务器，健康监控，代理 |
| [`market`](src/codomyrmex/market/) | 4 | 3 | [📖](docs/modules/market/) | [⚙️](config/market/config.yaml) | [📜](scripts/market/) | 市场数据，交易信号，投资组合分析 |
| [`logistics`](src/codomyrmex/logistics/) | 27 | 9 | [📖](docs/modules/logistics/) | [⚙️](config/logistics/config.yaml) | [📜](scripts/logistics/) | 任务路由，供应链，资源分配 |
| [`relations`](src/codomyrmex/relations/) | 15 | 4 | [📖](docs/modules/relations/) | [⚙️](config/relations/config.yaml) | [📜](scripts/relations/) | 联系人管理，关系图谱，CRM |
| [`physical_management`](src/codomyrmex/physical_management/) | 8 | 4 | [📖](docs/modules/physical_management/) | [⚙️](config/physical_management/config.yaml) | [📜](scripts/physical_management/) | IoT 设备跟踪，实物资产管理 |
### 🛠️ 开发者工具模块
| 模块 | Py | 测试 | 文档 | 配置 | 脚本 | 描述 |
|:---|:---:|:---:|:---:|:---:|:---:|:---|
| [`cli`](src/codomyrmex/cli/) | 21 | 6 | [📖](docs/modules/cli/) | [⚙️](config/cli/config.yaml) | [📜](scripts/cli/) | 富文本 CLI，包含所有模块的子命令 |
| [`ide`](src/codomyrmex/ide/) | 16 | 9 | [📖](docs/modules/ide/) | [⚙️](config/ide/config.yaml) | [📜](scripts/ide/) | VS Code, Cursor, Antigravity IDE 集成 |
| [`git_operations`](src/codomyrmex/git_operations/) | 34 | 20 | [📖](docs/modules/git_operations/) | [⚙️](config/git_operations/config.yaml) | [📜](scripts/git_operations/) | 完整的 Git CLI 包装器（分支、合并、贮藏、子模块） |
| [`git_analysis`](src/codomyrmex/git_analysis/) | 16 | 4 | [📖](docs/modules/git_analysis/) | [⚙️](config/git_analysis/config.yaml) | [📜](scripts/git_analysis/) | 提交分析，贡献者统计，代码变动 |
| [`tree_sitter`](src/codomyrmex/tree_sitter/) | 7 | 2 | [📖](docs/modules/tree_sitter/) | [⚙️](config/tree_sitter/config.yaml) | [📜](scripts/tree_sitter/) | AST 解析，代码导航，结构化查询 |
| [`static_analysis`](src/codomyrmex/static_analysis/) | 4 | 9 | [📖](docs/modules/static_analysis/) | [⚙️](config/static_analysis/config.yaml) | [📜](scripts/static_analysis/) | Linting，复杂度指标，死代码检测 |
| [`terminal_interface`](src/codomyrmex/terminal_interface/) | 8 | 4 | [📖](docs/modules/terminal_interface/) | [⚙️](config/terminal_interface/config.yaml) | [📜](scripts/terminal_interface/) | 富文本终端 UI，ANSI 渲染，交互式提示 |
| [`scrape`](src/codomyrmex/scrape/) | 12 | 9 | [📖](docs/modules/scrape/) | [⚙️](config/scrape/config.yaml) | [📜](scripts/scrape/) | Web 抓取，HTML 解析，站点地图爬取 |
| [`search`](src/codomyrmex/search/) | 6 | 3 | [📖](docs/modules/search/) | [⚙️](config/search/config.yaml) | [📜](scripts/search/) | 全文搜索，模糊匹配，正则表达式搜索 |
### ⚙️ 配置与运维模块
| 模块 | Py | 测试 | 文档 | 配置 | 脚本 | 描述 |
|:---|:---:|:---:|:---:|:---:|:---:|:---|
| [`config_management`](src/codomyrmex/config_management/) | 13 | 7 | [📖](docs/modules/config_management/) | [⚙️](config/config_management/config.yaml) | [📜](scripts/config_management/) | 分层配置加载，验证，热重载 |
| [`config_monitoring`](src/codomyrmex/config_monitoring/) | 3 | 1 | [📖](docs/modules/config_monitoring/) | [⚙️](config/config_monitoring/config.yaml) | [📜](scripts/config_monitoring/) | 配置漂移检测和警报 |
| [`config_audits`](src/codomyrmex/config_audits/) | 4 | 1 | [📖](docs/modules/config_audits/) | [⚙️](config/config_audits/config.yaml) | [📜](scripts/config_audits/) | 配置合规性审计和规则引擎 |
| [`environment_setup`](src/codomyrmex/environment_setup/) | 4 | 4 | [📖](docs/modules/environment_setup/) | [⚙️](config/environment_setup/config.yaml) | [📜](scripts/environment_setup/) | 依赖解析，环境验证 |
| [`logging_monitoring`](src/codomyrmex/logging_monitoring/) | 16 | 4 | [📖](docs/modules/logging_monitoring/) | [⚙️](config/logging_monitoring/config.yaml) | [📜](scripts/logging_monitoring/) | 结构化日志，指标收集，警报 |
| [`telemetry`](src/codomyrmex/telemetry/) | 25 | 13 | [📖](docs/modules/telemetry/) | [⚙️](config/telemetry/config.yaml) | [📜](scripts/telemetry/) | OpenTelemetry traces, spans, exporters |
| [`performance`](src/codomyrmex/performance/) | 19 | 4 | [📖](docs/modules/performance/) | [⚙️](config/performance/config.yaml) | [📜](scripts/performance/) | 基准测试，性能分析，性能可视化 |
| [`maintenance`](src/codomyrmex/maintenance/) | 12 | 3 | [📖](docs/modules/maintenance/) | [⚙️](config/maintenance/config.yaml) | [📜](scripts/maintenance/) | 健康检查，清理，系统诊断 |
| [`release`](docs/modules/cerebrum/) | 4 | 2 | [📖](docs/modules/release/) | [⚙️](config/release/config.yaml) | [📜](scripts/release/) | 发布管理，变更日志生成，版本控制 |
### 🧩 框架与实用工具模块
| 模块 | Py | 测试 | 文档 | 配置 | 脚本 | 描述 |
|:---|:---:|:---:|:---:|:---:|:---:|:---|
| [`utils`](src/codomyrmex/utils/) | 17 | 15 | [📖](docs/modules/utils/) | [⚙️](config/utils/config.yaml) | [📜](scripts/utils/) | CLI 辅助工具，字符串操作，文件工具，装饰器 |
| [`validation`](src/codomyrmex/validation/) | 16 | 7 | [📖](docs/modules/validation/) | [⚙️](config/validation/config.yaml) | [📜](scripts/validation/) | Schema 验证，数据契约，类型检查 |
| [`exceptions`](src/codomyrmex/exceptions/) | 13 | 2 | [📖](docs/modules/exceptions/) | [⚙️](config/exceptions/config.yaml) | [📜](scripts/exceptions/) | 全面的异常层次结构 (AI, IO, Git, Config) |
| [`events`](src/codomyrmex/events/) | 29 | 7 | [📖](docs/modules/events/) | [⚙️](config/events/config.yaml) | [📜](scripts/events/) | 事件总线，发布/订阅，事件存储，日志监听器 |
| [`plugin_system`](src/codomyrmex/plugin_system/) | 12 | 7 | [📖](docs/modules/plugin_system/) | [⚙️](config/plugin_system/config.yaml) | [📜](scripts/plugin_system/) | 插件发现，生命周期，依赖注入 |
| [`dependency_injection`](src/codomyrmex/dependency_injection/) | 4 | 2 | [📖](docs/modules/dependency_injection/) | [⚙️](config/dependency_injection/config.yaml) | [📜](scripts/dependency_injection/) | IoC 容器，服务定位器，作用域生命周期 |
| [`concurrency`](src/codomyrmex/concurrency/) | 17 | 5 | [📖](docs/modules/concurrency/) | [⚙️](config/concurrency/config.yaml) | [📜](scripts/concurrency/) | 分布式锁，信号量，Redis 锁定 |
| [`compression`](src/codomyrmex/compression/) | 8 | 1 | [📖](docs/modules/compression/) | [⚙️](config/compression/config.yaml) | [📜](scripts/compression/) | gzip, zstd, brotli 压缩算法 |
| [`templating`](src/codomyrmex/templating/) | 8 | 4 | [📖](docs/modules/templating/) | [⚙️](config/templating/config.yaml) | [📜](scripts/templating/) | Jinja2 模板，代码生成模板 |
| [`feature_flags`](src/codomyrmex/feature_flags/) | 9 | 6 | [📖](docs/modules/feature_flags/) | [⚙️](config/feature_flags/config.yaml) | [📜](scripts/feature_flags/) | 功能标志管理，发布策略 |
| [`tool_use`](src/codomyrmex/tool_use/) | 5 | 4 | [📖](docs/modules/tool_use/) | [⚙️](config/tool_use/config.yaml) | [📜](scripts/tool_use/) | 工具注册，执行和发现 |
| [`testing`](src/codomyrmex/testing/) | 15 | 7 | [📖](docs/modules/testing/) | [⚙️](config/testing/config.yaml) | [📜](scripts/testing/) | 测试 Fixtures，运行器，覆盖率工具 |
| [`documentation`](src/codomyrmex/documentation/) | 45 | 10 | [📖](docs/modules/documentation/) | [⚙️](config/documentation/config.yaml) | [📜](scripts/documentation/) | Docusaurus 站点，文档生成，质量检查 |
| [`docs_gen`](src/codomyrmex/docs_gen/) | 4 | 2 | [📖](docs/modules/docs_gen/) | [⚙️](config/docs_gen/config.yaml) | [📜](scripts/docs_gen/) | 从源代码自动生成文档 |
| [`module_template`](src/codomyrmex/module_template/) | 2 | 5 | [📖](docs/modules/module_template/) | [⚙️](config/module_template/config.yaml) | [📜](scripts/module_template/) | 创建新模块的规范模板 |
| [`operating_system`](src/codomyrmex/operating_system/) | 10 | 1 | [📖](docs/modules/operating_system/) | [⚙️](config/operating_system/config.yaml) | [📜](scripts/operating_system/) | OS 交互，文件系统 |
| [`file_system`](src/codomyrmex/file_system/) | 2 | 2 | [📖](docs/modules/file_system/) | [⚙️](config/file_system/config.yaml) | [📜](scripts/file_system/) | 文件操作，目录遍历器，权限 |
| [`dark`](src/codomyrmex/dark/) | 4 | 2 | [📖](docs/modules/dark/) | [⚙️](config/dark/config.yaml) | [📜](scripts/dark/) | Dark PDF 提取和处理 |
| [`embodiment`](src/codomyrmex/embodiment/) | 9 | 1 | [📖](docs/modules/embodiment/) | [⚙️](config/embodiment/config.yaml) | [📜](scripts/embodiment/) | ROS Bridge，传感器，执行器（已弃用） |
| [`demos`](src/codomyrmex/demos/) | 2 | 1 | [📖](docs/modules/demos/) | [⚙️](config/demos/config.yaml) | [📜](scripts/demos/) | 演示注册表和展示运行器 |
| [`formal_verification`](src/codomyrmex/formal_verification/) | 8 | 2 | [📖](docs/modules/formal_verification/) | [⚙️](config/formal_verification/config.yaml) | [📜](scripts/formal_verification/) | Z3 后端，SMT 求解器，不变量检查 |
| [`system_discovery`](src/codomyrmex/system_discovery/) | 14 | 4 | [📖](docs/modules/system_discovery/) | [⚙️](config/system_discovery/config.yaml) | [📜](scripts/system_discovery/) | 系统自省，能力检测 |
### 🧬 ML 训练与优化模块
| 模块 | Py | 文档 | 描述 |
|:---|:---:|:---:|:---|
| [`lora`](src/codomyrmex/lora/) | 3 | [📖](docs/modules/lora/) | LoRA 微调适配器 |
| [`peft`](src/codomyrmex/peft/) | 3 | [📖](docs/modules/peft/) | 参数高效微调 |
| [`rlhf`](src/codomyrmex/rlhf/) | 3 | [📖](docs/modules/rlhf/) | 基于人类反馈的强化学习 |
| [`dpo`](src/codomyrmex/dpo/) | 3 | [📖](docs/modules/dpo/) | 直接偏好优化 |
| [`distillation`](src/codomyrmex/distillation/) | 3 | [📖](docs/modules/distillation/) | 模型蒸馏和压缩 |
| [`quantization`](src/codomyrmex/quantization/) | 5 | [📖](docs/modules/quantization/) | 模型量化 (INT8, FP16) |
| [`distributed_training`](src/codomyrmex/distributed_training/) | 3 | [📖](docs/modules/distributed_training/) | 多 GPU 和分布式训练 |
| [`autograd`](src/codomyrmex/autograd/) | 4 | [📖](docs/modules/autograd/) | 自动微分引擎 |
| [`matmul_kernel`](src/codomyrmex/matmul_kernel/) | 3 | [📖](docs/modules/matmul_kernel/) | 自定义矩阵乘法内核 |
| [`softmax_opt`](src/codomyrmex/softmax_opt/) | 3 | [📖](docs/modules/softmax_opt/) | Softmax 优化（FlashAttention 风格） |
| [`nas`](src/codomyrmex/nas/) | 3 | [📖](docs/modules/nas/) | 神经架构搜索 |
| [`model_merger`](src/codomyrmex/model_merger/) | 3 | [📖](docs/modules/model_merger/) | 模型合并 (TIES, SLERP, DARE) |
| [`slm`](src/codomyrmex/slm/) | 3 | [📖](docs/modules/slm/) | 小语言模型优化 |
| [`ssm`](src/codomyrmex/ssm/) | 3 | [📖](docs/modules/ssm/) | 状态空间模型 |
| [`eval_harness`](src/codomyrmex/eval_harness/) | 3 | [📖](docs/modules/eval_harness/) | LLM 评估工具套件 |
| [`logit_processor`](src/codomyrmex/logit_processor/) | 3 | [📖](docs/modules/logit_processor/) | Logit 操作和处理 |
| [`tokenizer`](src/codomyrmex/tokenizer/) | 4 | [📖](docs/modules/tokenizer/) | 自定义分词器训练和管理 |
### 🔗 数据管道与基础设施模块
| 模块 | Py | 文档 | 描述 |
|:---|:---:|:---:|:---|
| [`api`](src/codomyrmex/api/) | 31 | [📖](docs/modules/api/) | REST/GraphQL API 框架 |
| [`collaboration`](src/codomyrmex/collaboration/) | 30 | [📖](docs/modules/collaboration/) | 多智能体协作协议 |
| [`ml_pipeline`](src/codomyrmex/ml_pipeline/) | 2 | [📖](docs/modules/ml_pipeline/) | ML 流水线编排 |
| [`data_curation`](src/codomyrmex/data_curation/) | 3 | [📖](docs/modules/data_curation/) | 数据集管理和清洗 |
| [`synthetic_data`](src/codomyrmex/synthetic_data/) | 3 | [📖](docs/modules/synthetic_data/) | 合成数据生成 |
| [`text_to_sql`](src/codomyrmex/text_to_sql/) | 3 | [📖](docs/modules/text_to_sql/) | 自然语言转 SQL 翻译 |
| [`semantic_router`](src/codomyrmex/semantic_router/) | 3 | [📖](docs/modules/semantic_router/) | 语义意图路由 |
### 🧩 专业模块
| 模块 | Py | 文档 | 描述 |
|:---|:---:|:---:|:---|
| [`ai_gateway`](src/codomyrmex/ai_gateway/) | 3 | [📖](docs/modules/ai_gateway/) | AI 网关和 API 代理 |
| [`aider`](src/codomyrmex/aider/) | 5 | [📖](docs/modules/aider/) | Aider AI 编程助手集成 |
| [`neural`](src/codomyrmex/neural/) | 7 | [📖](docs/modules/neural/) | 神经网络原语 |
| [`interpretability`](src/codomyrmex/interpretability/) | 3 | [📖](docs/modules/interpretability/) | 模型可解释性和说明性 |
| [`image`](src/codomyrmex/image/) | 2 | [📖](docs/modules/image/) | 图像处理工具 |
| [`examples`](src/codomyrmex/examples/) | 9 | [📖](docs/modules/examples/) | 参考实现示例 |
| [`pai_pm`](src/codomyrmex/pai_pm/) | 6 | [📖](docs/modules/pai_pm/) | PAI 项目管理服务器 |
| [`soul`](src/codomyrmex/soul/) | 4 | [📖](docs/modules/soul/) | 生物认知身份和角色引擎 |
## 🔬 模块依赖架构
```
graph LR
subgraph Foundation["Foundation Layer"]
Utils["utils"]
Exceptions["exceptions"]
Events["events"]
Validation["validation"]
Config["config_management"]
end
subgraph DataLayer["Data Layer"]
DB["database_management"]
Cache["cache"]
Serial["serialization"]
Docs["documents"]
Memory["agentic_memory"]
end
subgraph AILayer["AI Layer"]
LLM["llm"]
Agents["agents"]
Cerebrum["cerebrum"]
RAG["graph_rag"]
VS["vector_store"]
PE["prompt_engineering"]
end
subgraph InfraLayer["Infrastructure Layer"]
Cloud["cloud"]
Container["containerization"]
Deploy["deployment"]
CICD["ci_cd_automation"]
Net["networking"]
end
subgraph SecurityLayer["Security Layer"]
Auth["auth"]
Crypto["crypto"]
Encrypt["encryption"]
Identity["identity"]
Privacy["privacy"]
end
subgraph AppLayer["Application Layer"]
Orch["orchestrator"]
MCP["model_context_protocol"]
CLI["cli"]
Website["website"]
PAI["email + calendar"]
end
Foundation --> DataLayer
Foundation --> SecurityLayer
DataLayer --> AILayer
SecurityLayer --> AILayer
AILayer --> AppLayer
InfraLayer --> AppLayer
DataLayer --> InfraLayer
```
## 🚀 智能体编排流水线
```
sequenceDiagram
participant User
participant CLI
participant Orchestrator
participant MCP as MCP Server
participant Agents
participant LLM as LLM Provider
participant Tools
User->>CLI: codomyrmex run --task "analyze codebase"
CLI->>Orchestrator: Create workflow
Orchestrator->>MCP: Register available tools
MCP->>Tools: Discover ~424 tools across 127 modules
Orchestrator->>Agents: Dispatch agent
Agents->>LLM: Generate completion (Gemini 2.5 Pro)
LLM-->>Agents: Response + tool calls
Agents->>MCP: Execute tool calls
MCP->>Tools: Run git_analysis, static_analysis, etc.
Tools-->>MCP: Results
MCP-->>Agents: Tool outputs
Agents-->>Orchestrator: Completed task
Orchestrator-->>CLI: Display results
CLI-->>User: Formatted output
```
## 🏗️ 项目结构
```
codomyrmex/
├── .github/ # 36 GitHub Actions workflows, templates, docs
├── config/ # 127 module-specific config.yaml files
├── docs/ # 1,029+ documentation files across 18 directories
│ ├── ARCHITECTURE.md # System architecture
│ ├── AGENTS.md # Agent coordination
│ ├── SPEC.md # Technical specification
│ ├── PAI.md # Personal AI reference
│ ├── PAI_DASHBOARD.md # PAI dashboard reference
│ ├── index.md # MkDocs site index
│ ├── getting-started/ # 9 quick-start docs
│ ├── development/ # 10 dev guides
│ ├── modules/ # 126 per-module doc directories
│ ├── security/ # 11 security guides
│ ├── agi/ # 14 AGI theory docs
│ └── ... (18 directories)
├── scripts/ # 445+ orchestrator scripts
│ ├── agents/ # Jules batch dispatch, harvester
│ ├── maintenance/ # Config generation, health checks
│ └── ... (90+ module scripts)
├── src/codomyrmex/ # Main source (127 modules)
│ ├── agents/ # 168 files
│ ├── llm/ # 41 files
│ ├── security/ # 47 files
│ ├── tests/ # 905+ test files (zero-mock)
│ └── ... (122 more modules)
├── CHANGELOG.md # Release history
├── CITATION.cff # Citation metadata
└── pyproject.toml # uv-managed project config (uv_build backend)
```
## 📊 汇总统计
| 指标 | 值 |
|:---|:---:|
| **总模块数** | 127 |
| **总 Python 文件数** | 3,000+ |
| **总测试文件数** | 905+ |
| **文档文件数** | 1,029+ |
| **GitHub 工作流** | 36 |
| **MCP 工具** | 424 |
| **测试策略** | Zero-Mock (100% 真实方法) |
| **默认 LLM** | Gemini 2.5 Pro |
| **包管理器** | uv |
| **Python 版本** | ≥3.11 |
## 🔌 LLM 提供商矩阵
| 提供商 | 模型 | 状态 | 免费层级 |式传输 | 工具调用 |
|:---|:---|:---:|:---:|:---:|:---:|
| **Google Gemini** | gemini-2.5-pro | ✅ | ✅ | ✅ | ✅ |
| **Google Imagen** | imagen-3.0-generate-002 | ✅ | ❌ | — | — |
| **Google Veo** | veo-2.0-generate-001 | ✅ | ❌ | — | — |
| **OpenRouter** | Llama 3.3 70B | ✅ | ✅ | ✅ | ✅ |
| **OpenRouter** | DeepSeek R1 | ✅ | ✅ | ✅ | ✅ |
| **OpenRouter** | Google Gemma 3 | ✅ | ✅ | ✅ | ✅ |
| **Anthropic** | Claude 3.5 Sonnet | ✅ | ❌ | ✅ | ✅ |
| **OpenAI** | GPT-4o | ✅ | ❌ | ✅ | ✅ |
## 🤖 智能体调度架构
```
graph TD
subgraph Dispatch["Agent Dispatch Layer"]
Jules["Jules CLI v0.1.42"]
GeminiCLI["Gemini CLI v0.22.5"]
Claude["Claude Code"]
Codex["Codex CLI"]
end
subgraph Orchestration["Orchestration"]
BatchDispatch["jules_batch_dispatch.sh"]
MegaSwarm["mega_swarm_dispatcher.py"]
Harvester["mega_swarm_harvester.py"]
end
subgraph Targets["Target Modules - 126"]
M1["agentic_memory"]
M2["agents"]
Mdots["..."]
M95["website"]
end
MegaSwarm --> Jules
BatchDispatch --> Jules
Jules --> Targets
GeminiCLI --> Targets
Claude --> Targets
Harvester --> Jules
Harvester -->|"Pull and Apply"| Targets
```
## 🧪 测试理念
```
graph LR
subgraph Policy["Zero-Mock Policy"]
direction TB
R1["Real methods only"]
R2["Real file I/O"]
R3["Real network calls"]
R5["No unittest.mock"]
R6["No MagicMock"]
end
subgraph Layers["Test Layers"]
Unit["Unit Tests - 800+ files"]
Integration["Integration Tests"]
E2E["End-to-End Validation"]
end
Policy --> Layers
```
```
# 运行所有测试
uv run pytest src/codomyrmex/tests/ -v --tb=short
# 运行特定模块
uv run pytest src/codomyrmex/tests/unit/llm/ -v
# Lint 和格式化
uv run ruff check . # lint
uv run ruff format . # format
uv run ty check src/ # type check
```
## 🗺️ 配置架构
```
graph TB
subgraph ConfigRoot["config/"]
C1["agents/config.yaml"]
C2["llm/config.yaml"]
C3["security/config.yaml"]
Cdots["... 127 total"]
end
subgraph Scripts["scripts/"]
S1["agents/orchestrator.py"]
S2["llm/demo.py"]
S3["security/audit.py"]
Sdots["... 445+ scripts"]
end
subgraph Source["src/codomyrmex/"]
Src1["agents/"]
Src2["llm/"]
Src3["security/"]
SrcDots["... 127 modules"]
end
C1 -.->|"YAML load"| S1
C2 -.->|"YAML load"| S2
C3 -.->|"YAML load"| S3
S1 -->|"import"| Src1
S2 -->|"import"| Src2
S3 -->|"import"| Src3
```
## 个人 AI 仪表板
```
graph LR
subgraph Dashboard["PAI Dashboard localhost:3000"]
Overview["Overview Tab"]
EmailTab["Email Tab"]
CalendarTab["Calendar Tab"]
SkillsTab["Skills Tab"]
AgentsTab["Agents Tab"]
end
subgraph Backend["Backend Services"]
Gmail["Gmail API"]
GCal["Google Calendar API"]
MCP2["MCP Tool Server"]
AgentAPI["Agent Dispatch API"]
end
subgraph External["External Services"]
Google["Google Workspace"]
Jules2["Jules Agents"]
Gemini["Gemini 2.5 Pro"]
end
Dashboard --> Backend
Backend --> External
```
## ⚡ 快速开始
```
# 克隆
git clone https://github.com/docxology/codomyrmex.git && cd codomyrmex
# 安装（所有开发依赖）
uv sync --all-groups
# 设置环境
cp .env.example .env # Edit with your API keys
# 运行 CLI
uv run codomyrmex --help
# 运行测试
uv run pytest src/codomyrmex/tests/ -v
# Lint 和格式化
uv run ruff check . && uv run ruff format .
# Dispatch Jules agents
uv run python scripts/agents/mega_swarm_dispatcher.py
```
## 文档标准
每个模块都遵循 **RASP** 文档模式：
| 文档 | 目的 | 链接 |
|:---|:---|:---|
| `README.md` | 人类可读的概述 | [根目录 README](README.md)，[Docs README](docs/README.md) |
| `AGENTS.md` | 智能体可读的指令 | [根目录 AGENTS](AGENTS.md)，[Docs AGENTS](docs/AGENTS.md) |
| `SPEC.md` | 技术规范 | [根目录 SPEC](SPEC.md)，[Docs SPEC](docs/SPEC.md) |
| `PAI.md` | Personal AI 集成 | [根目录 PAI](PAI.md)，[Docs PAI](docs/PAI.md) |
## 🏗️ `.github/` 目录概览
### 工作流（共 36 个）
| 类别 | 工作流 | 描述 |
|:---|:---|:---|
| **核心 CI/CD** | [ci.yml](workflows/ci.yml)，[security.yml](workflows/security.yml)，[release.yml](workflows/release.yml)，[pre-commit.yml](workflows/pre-commit.yml) | Lint，测试，安全扫描，发布 |
| **代码质量** | [code-health.yml](workflows/code-health.yml)，[benchmarks.yml](workflows/benchmarks.yml)，[documentation.yml](workflows/documentation.yml)，[documentation-validation.yml](workflows/documentation-validation.yml) | 质量门禁，基准测试，文档 |
| **PR 自动化** | [auto-merge.yml](workflows/auto-merge.yml)，[pr-labeler.yml](workflows/pr-labeler.yml)，[pr-title-check.yml](workflows/pr-title-check.yml)，[pr-conflict-check.yml](workflows/pr-conflict-check.yml)，[pr-coverage-comment.yml](workflows/pr-coverage-comment.yml)，[pr-linter-comments.yml](workflows/pr-linter-comments.yml) | 自动合并，标签，覆盖率 |
| **AI 调度** | [gemini-dispatch.yml](workflows/gemini-dispatch.yml)，[gemini-invoke.yml](workflows/gemini-invoke.yml)，[gemini-review.yml](workflows/gemini-review.yml)，[gemini-triage.yml](workflows/gemini-triage.yml)，[gemini-scheduled-triage.yml](workflows/gemini-scheduled-triage.yml)，[jules-dispatch.yml](workflows/jules-dispatch.yml) | Gemini 和 Jules 智能体编排 |
| **维护** | [maintenance.yml](workflows/maintenance.yml)，[cleanup-branches.yml](workflows/cleanup-branches.yml)，[lock-threads.yml](workflows/lock-threads.yml)，[workflow-coordinator.yml](workflows/workflow-coordinator.yml)，[workflow-status.yml](workflows/workflow-status.yml) | 仓库健康，分支清理，状态 |
| **社区** | [first-interaction.yml](workflows/first-interaction.yml)，[first-pr-merged.yml](workflows/first-pr-merged.yml)，[agent-welcome.yml](workflows/agent-welcome.yml)，[agent-metrics.yml](workflows/agent-metrics.yml) | 新用户引导，智能体欢迎 |
| **依赖** | [dependency-review.yml](workflows/dependency-review.yml)，[dependabot-auto-approve.yml](workflows/dependabot-auto-approve.yml)，[sbom.yml](workflows/sbom.yml) | 依赖审查，SBOM 生成 |
### 社区与配置文件
| 文件 | 目的 |
|:---|:---|
| [CONTRIBUTING.md](CONTRIBUTING.md) | 贡献者指南，包含 PR 流程和代码标准 |
| [CODEOWNERS](CODEOWNERS) | 按文件路径自动分配审查者 |
| [PULL_REQUEST_TEMPLATE.md](PULL_REQUEST_TEMPLATE.md) | 标准 PR 检查清单 |
| [ISSUE_TEMPLATE/](ISSUE_TEMPLATE/) | Bug 报告，功能请求，Jules 任务，文档问题 |
| [dependabot.yml](dependabot.yml) | 自动依赖更新配置 |
| [release-drafter.yml](release-drafter.yml) | 自动生成的发行说明 |
| [FUNDING.yml](FUNDING.yml) | GitHub Sponsors 配置 |
| [WORKFLOW_IMPROVEMENTS.md](WORKFLOW_IMPROVEMENTS.md) | 计划中的工作流增强 |
| [WORKFLOW_TESTING_GUIDE.md](WORKFLOW_TESTING_GUIDE.md) | 本地测试 GitHub Actions 指南 |
## 📜 许可证
MIT 许可证 — 详情见 [LICENSE](LICENSE)。
由 🐜 Codomyrmex 构建 — 自主软件群落
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